PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_12630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 392aa    MW: 43021.4 Da    PI: 8.2667
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_12630genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-071171026
                GGTS--TTTTT-SS-SS CS
     zf-CCCH 10 artGtCkyGdrCkFaHg 26
                ++tG C yG++C+++H+
  PEQU_12630  1 MKTGLCAYGSNCRYNHP 17
                89**************9 PP

2zf-CCCH32.71.3e-103660327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                ++ C++f+++G Ck+G++Ck++H++
  PEQU_12630 36 QPDCQYFLKNGMCKFGATCKYHHPR 60
                789********************96 PP

3zf-CCCH382.7e-1282105427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 + C++f+rtGtCkyG  CkF+H++
  PEQU_12630  82 KSCPYFMRTGTCKYGIVCKFNHPQ 105
                 56********************97 PP

4zf-CCCH352.4e-11252277227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+++++tG Ck+G+ Ck++H++
  PEQU_12630 252 DQPECQYYMKTGSCKFGSICKYHHPK 277
                 689*********************96 PP

5zf-CCCH23.59.8e-08296322127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C+++   GtC+yG+ CkF H++
  PEQU_12630 296 PGEPVCSYYIFHGTCRYGPVCKFDHPF 322
                 57899********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006424.9E-5117IPR000571Zinc finger, CCCH-type
SMARTSM0035688118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.906119IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-63360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.143361IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-73660IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-63762IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-43961IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-678106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.68578106IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-580105IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-982105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-583104IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-4250277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.962250278IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-9252277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5254278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4256277IPR000571Zinc finger, CCCH-type
SMARTSM003560.0072295322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.441295323IPR000571Zinc finger, CCCH-type
PfamPF146080.45306321No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MKTGLCAYGS NCRYNHPTHL EQGTQDKGEL PQRVGQPDCQ YFLKNGMCKF GATCKYHHPR  60
DRRDAQHVPL NALGLPIRQD QKSCPYFMRT GTCKYGIVCK FNHPQPATFG PVLPLTGFPT  120
YGSTMASAAL TSNLPLAGVS SHHSQNLAAY MSVFLPSFPG TMPVQQGWPA YMVRIDCSET  180
DCGTIGVDAP DPLSSSPASL SCTVTSGKSS NFTNSDPSAL FQKLHHPSLM PNSNNSAQSS  240
LSSTENFPER PDQPECQYYM KTGSCKFGSI CKYHHPKERS SICTSTLSPL GLPLRPGEPV  300
CSYYIFHGTC RYGPVCKFDH PFVGYYNMPA TYYTDSVTHL PNQRNTTKTM KSEMNNGVLS  360
ANSNKEDKNS STHASSMLHI SPSSESTQNN LN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803514.11e-117PREDICTED: zinc finger CCCH domain-containing protein 57-like isoform X3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-76zinc finger protein 1